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emb2746 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836461, updated on 22-Aug-2024

Summary

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Official Symbol
emb2746
Primary source
Araport:AT5G63420
Locus tag
AT5G63420
See related
TAIR:AT5G63420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 2746; MLE2.5; MLE2_5
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (25400317..25406250)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene adenylate kinase 1 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene hypothetical protein (DUF167) Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Halpert M, et al. Plant Mol Biol, 2019 Jan. PMID 30511330
  2. Ribonuclease J is required for chloroplast and embryo development in Arabidopsis. Chen H, et al. J Exp Bot, 2015 Apr. PMID 25871650, Free PMC Article
  3. Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA. Sharwood RE, et al. RNA, 2011 Dec. PMID 22033332, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The robust endonucleolytic activity of AtRNase J suggests its involvement in the processing and degradation of RNA in the chloroplast.
    Title: The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
  2. Ribonuclease J (RNase J) may play a vital role in embryo morphogenesis and apical-basal pattern formation by regulating chloroplast development.
    Title: Ribonuclease J is required for chloroplast and embryo development in Arabidopsis.
  3. a major role of chloroplast RNase J is RNA surveillance to prevent overaccumulation of antisense RNA, which would otherwise exert deleterious effects on chloroplast gene expression. [RNase J]
    Title: Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_125737.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 5'-3' exonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables endonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within auxin transport IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within longitudinal axis specification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RNA-metabolising metallo-beta-lactamase family protein
NP_201147.2
  • embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25400317..25406250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125737.4 → NP_201147.2  RNA-metabolising metallo-beta-lactamase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201147.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YC1, Q84W56, Q9FMV9, Q9FMW0
    UniProtKB/TrEMBL
    A0A178UH95, A0A5S9YHU8, A0A654GDS8
    Conserved Domains (2) summary
    cd12203
    Location:819 → 884
    GT1; myb-like, SANT family
    COG0595
    Location:103 → 659
    RnjA; mRNA degradation ribonuclease J1/J2 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84W56.1

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