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LOB Lateral organ boundaries (LOB) domain family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836429, updated on 18-Sep-2024

Summary

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Official Symbol
LOB
Official Full Name
Lateral organ boundaries (LOB) domain family protein
Primary source
TAIR:AT5G63090
Locus tag
AT5G63090
See related
Araport:AT5G63090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LATERAL ORGAN BOUNDARIES; MDC12.5; MDC12_5
Summary
Involved in lateral organ development
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Genomic context

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See LOB in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (25308516..25311019, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Plant thionin family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene histone deacetylase 6 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Bell EM, et al. Proc Natl Acad Sci U S A, 2012 Dec 18. PMID 23213252, Free PMC Article
  2. The lateral organ boundaries gene defines a novel, plant-specific gene family. Shuai B, et al. Plant Physiol, 2002 Jun. PMID 12068116, Free PMC Article
  3. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Husbands A, et al. Nucleic Acids Res, 2007. PMID 17913740, Free PMC Article
  4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries
    Title: Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125703.4
NM_180921.2
NM_180922.1
NM_180923.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within organ boundary specification between lateral organs and the meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Lateral organ boundaries (LOB) domain family protein
NP_201114.1
  • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851252.1
  • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851253.1
  • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851254.1
  • LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25308516..25311019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180921.2 → NP_851252.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851252.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG58, Q549W6, Q8VWF4, Q9FML4
    UniProtKB/TrEMBL
    A0A178UKE6, A0A5S9YGK9, A0A654GEM6
    Conserved Domains (1) summary
    pfam03195
    Location:11 → 109
    LOB; Lateral organ boundaries (LOB) domain

  2. NM_125703.4 → NP_201114.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201114.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG58, Q549W6, Q8VWF4, Q9FML4
    UniProtKB/TrEMBL
    A0A178UKE6, A0A5S9YGK9, A0A654GEM6
    Conserved Domains (1) summary
    pfam03195
    Location:11 → 109
    LOB; Lateral organ boundaries (LOB) domain

  3. NM_180922.1 → NP_851253.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851253.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG58, Q549W6, Q8VWF4, Q9FML4
    UniProtKB/TrEMBL
    A0A178UKE6, A0A5S9YGK9, A0A654GEM6
    Conserved Domains (1) summary
    pfam03195
    Location:11 → 109
    LOB; Lateral organ boundaries (LOB) domain

  4. NM_180923.1 → NP_851254.1  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851254.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG58, Q549W6, Q8VWF4, Q9FML4
    UniProtKB/TrEMBL
    A0A178UKE6, A0A5S9YGK9, A0A654GEM6
    Conserved Domains (1) summary
    pfam03195
    Location:11 → 109
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FML4.1

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