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AT5G58340 myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835946, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G58340
Gene description
myb-like HTH transcriptional regulator family protein
Primary source
Araport:AT5G58340
Locus tag
AT5G58340
See related
TAIR:AT5G58340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCK7.21; MCK7_21
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Genomic context

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See AT5G58340 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (23582495..23585148)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene lactate/malate dehydrogenase family protein Neighboring gene with no lysine (K) kinase 4 Neighboring gene ovate family protein 3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203637.1
NM_125219.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
myb-like HTH transcriptional regulator family protein
NP_001190566.1
  • myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 5 (TAIR:AT1G15720.1).
NP_200642.2
  • myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 5 (TAIR:AT1G15720.1); Has 475 Blast hits to 469 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 19; Plants - 384; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23582495..23585148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203637.1 → NP_001190566.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190566.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YFT8, A0A654GC66, Q5XUY3
    Conserved Domains (1) summary
    cd11660
    Location:398 → 446
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. NM_125219.4 → NP_200642.2  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200642.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YFT8, A0A654GC66, Q5XUY3
    Conserved Domains (1) summary
    cd11660
    Location:398 → 446
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
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