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PSD2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835825, updated on 11-Sep-2024

Summary

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Official Symbol
PSD2
Primary source
TAIR:AT5G57190
Locus tag
AT5G57190
See related
Araport:AT5G57190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUL3.14; MUL3_14; phosphatidylserine decarboxylase 2; PHOSPHATIDYLSERINE DECARBOXYLASE 2
Summary
Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.
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Genomic context

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Location:
chromosome: 5
Exon count:
21
Sequence:
Chromosome: 5; NC_003076.8 (23171049..23175495, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tautomerase/MIF superfamily protein Neighboring gene chloroplast import apparatus 2 Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene cytochrome P450, family 81, subfamily F, polypeptide 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Nerlich A, et al. Plant Physiol, 2007 Jun. PMID 17449644, Free PMC Article
  2. Plants synthesize ethanolamine by direct decarboxylation of serine using a pyridoxal phosphate enzyme. Rontein D, et al. J Biol Chem, 2001 Sep 21. PMID 11461929
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_001345247.1
NM_125101.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylserine decarboxylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylserine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylserine decarboxylase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylserine decarboxylase 2
NP_200529.4
  • phosphatidylserine decarboxylase 2 (PSD2); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: N-terminal protein myristoylation, phospholipid biosynthetic process; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Calcium-binding EF-hand (InterPro:IPR002048), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), EF-hand-like domain (InterPro:IPR011992), Phosphatidylserine decarboxylase (InterPro:IPR005221); BEST Arabidopsis thaliana protein match is: phosphatidylserine decarboxylase 3 (TAIR:AT4G25970.1); Has 3739 Blast hits to 3658 proteins in 1335 species: Archae - 3; Bacteria - 2361; Metazoa - 260; Fungi - 489; Plants - 195; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23171049..23175495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125101.5 → NP_200529.4  phosphatidylserine decarboxylase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200529.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4GNA9, F4KAK5, Q9LU67
    UniProtKB/TrEMBL
    A0A178UED8, A0A5S9YEY5
    Conserved Domains (1) summary
    PLN02964
    Location:1 → 634
    PLN02964; phosphatidylserine decarboxylase

  2. NM_001345247.1 → NP_001330975.1  phosphatidylserine decarboxylase 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCF8, A0A5S9YEY5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4KAK5.1

Gene LinkOut

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