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pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834906, updated on 18-Sep-2024

Summary

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Official Full Name
pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein
Primary source
TAIR:AT5G48500
Locus tag
AT5G48500
See related
Araport:AT5G48500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJE7.14; MJE7_14
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (19652980..19654355)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124226.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein
NP_568700.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19652980..19654355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124226.4 → NP_568700.1  pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568700.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFJ5, A0A5S9YCB0, Q8LEL0
Nucleotide Protein
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