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HB27 homeobox protein 27 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834288, updated on 18-Sep-2024

Summary

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Official Symbol
HB27
Official Full Name
homeobox protein 27
Primary source
TAIR:AT5G42780
Locus tag
AT5G42780
See related
Araport:AT5G42780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtHB27; homeobox protein 27; MJB21.16; MJB21_16; ZHD13; ZINC FINGER HOMEODOMAIN 13
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Genomic context

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See HB27 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (17154718..17155757)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Leucine carboxyl methyltransferase Neighboring gene plasma membrane fusion protein Neighboring gene Maf-like protein Neighboring gene uncharacterized protein Neighboring gene proteasome alpha subunit F1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nuclear import and DNA binding of the ZHD5 transcription factor is modulated by a competitive peptide inhibitor in Arabidopsis. Hong SY, et al. J Biol Chem, 2011 Jan 14. PMID 21059647, Free PMC Article
  2. The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. Tan QK, et al. Plant Physiol, 2006 Mar. PMID 16428600, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_123643.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
homeobox protein 27
NP_199092.1
  • homeobox protein 27 (HB27); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 22 (TAIR:AT4G24660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17154718..17155757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123643.3 → NP_199092.1  homeobox protein 27 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199092.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LGB1, Q9FMY7
    UniProtKB/TrEMBL
    A0A0G4NSG5, A0A178ULJ0, A0A384L2F9, A0A7G2FG81
    Conserved Domains (2) summary
    TIGR01565
    Location:179 → 236
    homeo_ZF_HD; homeobox domain, ZF-HD class
    TIGR01566
    Location:63 → 112
    ZF_HD_prot_N; ZF-HD homeobox protein Cys/His-rich dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FMY7.1

Gene LinkOut

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