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ACBP5 acyl-CoA binding protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832825, updated on 18-Sep-2024

Summary

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Official Symbol
ACBP5
Official Full Name
acyl-CoA binding protein 5
Primary source
TAIR:AT5G27630
Locus tag
AT5G27630
See related
Araport:AT5G27630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
acyl-CoA binding protein 5; AtACBP5; F15A18.90; F15A18_90
Summary
Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.
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Genomic context

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See ACBP5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (9775854..9781002)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene protein ALWAYS EARLY 1 Neighboring gene cyclin H;1 Neighboring gene translation initiation factor 3B1 Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene ncRNA Neighboring gene Trypsin family protein with PDZ domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Kelch-motif containing acyl-CoA binding proteins AtACBP4 and AtACBP5 are differentially expressed and function in floral lipid metabolism. Ye ZW, et al. Plant Mol Biol, 2017 Jan. PMID 27826761
  2. Light-regulated Arabidopsis ACBP4 and ACBP5 encode cytosolic acyl-CoA-binding proteins that bind phosphatidylcholine and oleoyl-CoA ester. Xiao S, et al. Plant Physiol Biochem, 2009 Oct. PMID 19589686
  3. Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition. Xiao S, et al. Plant Mol Biol, 2008 Dec. PMID 18773301, Free PMC Article
  4. Arabidopsis cytosolic acyl-CoA-binding proteins ACBP4, ACBP5 and ACBP6 have overlapping but distinct roles in seed development. Hsiao AS, et al. Biosci Rep, 2014 Dec 23. PMID 25423293, Free PMC Article
  5. The Arabidopsis cytosolic Acyl-CoA-binding proteins play combinatory roles in pollen development. Hsiao AS, et al. Plant Cell Physiol, 2015 Feb. PMID 25395473

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtACBP4 and AtACBP5 both function in floral lipidic metabolism and play complementary roles in Arabidopsis microspore-to-pollen development.
    Title: Kelch-motif containing acyl-CoA binding proteins AtACBP4 and AtACBP5 are differentially expressed and function in floral lipid metabolism.
  2. The roles of cytosolic AtACBP4, 5 and 6 in floral development were addressed in this study.
    Title: The Arabidopsis cytosolic Acyl-CoA-binding proteins play combinatory roles in pollen development.
  3. Data indicate that the acyl-CoA-binding proteins acbp4acbp5acbp6 mutant showed the lightest seed weight and highest sensitivity to abscisic acid during germination.
    Title: Arabidopsis cytosolic acyl-CoA-binding proteins ACBP4, ACBP5 and ACBP6 have overlapping but distinct roles in seed development.
  4. Data suggest that light-regulated ACBP4 and ACBP5 are potential candidates for the intracellular transport of oleoyl-CoA ester exported from the chloroplast to the endoplasmic reticulum for the biosynthesis of non-plastidial membrane lipids.
    Title: Light-regulated Arabidopsis ACBP4 and ACBP5 encode cytosolic acyl-CoA-binding proteins that bind phosphatidylcholine and oleoyl-CoA ester.
  5. ACBP4 and ACBP5 are available in the cytosol to bind and transfer cytosolic oleoyl-CoA esters
    Title: Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001344023.1
NM_122645.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty-acyl-CoA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lipid transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to hypoxia IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to light stimulus TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
acyl-CoA binding protein 5
NP_198115.2
  • acyl-CoA binding protein 5 (ACBP5); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9775854..9781002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344021.1 → NP_001331944.1  acyl-CoA binding protein 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFD3, A0A5S9Y8U4

  2. NM_001344022.1 → NP_001331946.1  acyl-CoA binding protein 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFF0, A0A5S9Y8U4

  3. NM_122645.5 → NP_198115.2  acyl-CoA binding protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198115.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWD9
    UniProtKB/TrEMBL
    A0A654G4N9
    Conserved Domains (5) summary
    sd00038
    Location:296 → 343
    Kelch; KELCH repeat [structural motif]
    pfam00887
    Location:15 → 103
    ACBP; Acyl CoA binding protein
    pfam09304
    Location:533 → 618
    Cortex-I_coil; Cortexillin I, coiled coil
    pfam13415
    Location:305 → 355
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:182 → 220
    Kelch_5; Kelch motif

  4. NM_001344023.1 → NP_001331945.1  acyl-CoA binding protein 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFG3, A0A654G4N9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RWD9.1

Gene LinkOut

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