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GPI transamidase component family protein / Gaa1-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832033, updated on 18-Sep-2024

Summary

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Official Full Name
GPI transamidase component family protein / Gaa1-like family protein
Primary source
TAIR:AT5G19130
Locus tag
AT5G19130
See related
Araport:AT5G19130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24G5.30; T24G5_30
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (6415920..6419112, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121918.4
NM_203081.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
GPI transamidase component family protein / Gaa1-like family protein
NP_197414.2
  • GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 308 Blast hits to 305 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 119; Plants - 43; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
NP_974810.1
  • GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6415920..6419112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121918.4 → NP_197414.2  GPI transamidase component family protein / Gaa1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197414.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G316, F4JZM4, Q8GUL0
    Conserved Domains (1) summary
    cl14876
    Location:158 → 691
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

  2. NM_203081.2 → NP_974810.1  GPI transamidase component family protein / Gaa1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974810.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JZM3, Q8GUL0
    Conserved Domains (1) summary
    cl14876
    Location:155 → 687
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42
Nucleotide Protein
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