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Plant stearoyl-acyl-carrier-protein desaturase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831484, updated on 18-Sep-2024

Summary

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Official Full Name
Plant stearoyl-acyl-carrier-protein desaturase family protein
Primary source
TAIR:AT5G16240
Locus tag
AT5G16240
See related
Araport:AT5G16240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21H19.160; T21H19_160
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (5306740..5309961)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HEAT repeat-containing protein Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ACYL-ACYL CARRIER PROTEIN DESATURASE2 and 3 Are Responsible for Making Omega-7 Fatty Acids in the Arabidopsis Aleurone. Bryant FM, et al. Plant Physiol, 2016 Sep. PMID 27462083, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_121629.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables stearoyl-[ACP] desaturase activity IEA
Inferred from Electronic Annotation
more info
  
enables stearoyl-[ACP] desaturase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant stearoyl-acyl-carrier-protein desaturase family protein
NP_197128.1
  • Plant stearoyl-acyl-carrier-protein desaturase family protein; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction, fatty acid metabolic process, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5306740..5309961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121629.3 → NP_197128.1  Plant stearoyl-acyl-carrier-protein desaturase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197128.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LA10, Q9LF04
    UniProtKB/TrEMBL
    A0A5S9Y5F7, A0A654G1H2
    Conserved Domains (1) summary
    PLN00179
    Location:3 → 393
    PLN00179; acyl- [acyl-carrier protein] desaturase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LF04.1

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