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Plant stearoyl-acyl-carrier-protein desaturase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831483, updated on 18-Sep-2024

Summary

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Official Full Name
Plant stearoyl-acyl-carrier-protein desaturase family protein
Primary source
TAIR:AT5G16230
Locus tag
AT5G16230
See related
Araport:AT5G16230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21H19.150; T21H19_150
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (5302905..5306088)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein-like protein Neighboring gene HEAT repeat-containing protein Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene ncRNA Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ACYL-ACYL CARRIER PROTEIN DESATURASE2 and 3 Are Responsible for Making Omega-7 Fatty Acids in the Arabidopsis Aleurone. Bryant FM, et al. Plant Physiol, 2016 Sep. PMID 27462083, Free PMC Article
  2. Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds. Troncoso-Ponce MA, et al. Plant Cell, 2016 Oct. PMID 27681170, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001343444.1
NM_121628.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables stearoyl-[ACP] desaturase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables stearoyl-[ACP] desaturase activity IEA
Inferred from Electronic Annotation
more info
  
enables stearoyl-[ACP] desaturase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within endosperm development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in fatty acid homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of endosperm development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within unsaturated fatty acid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in unsaturated fatty acid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant stearoyl-acyl-carrier-protein desaturase family protein
NP_197127.1
  • Plant stearoyl-acyl-carrier-protein desaturase family protein; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction, fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5302905..5306088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121628.4 → NP_197127.1  Plant stearoyl-acyl-carrier-protein desaturase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197127.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LF05
    UniProtKB/TrEMBL
    A0A178UNA4, A0A5S9Y6X4, A0A654G1N2
    Conserved Domains (1) summary
    PLN00179
    Location:5 → 401
    PLN00179; acyl- [acyl-carrier protein] desaturase

  2. NM_001343444.1 → NP_001332411.1  Plant stearoyl-acyl-carrier-protein desaturase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UNA4, A0A1P8BGU7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LF05.3

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