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LRP1 Lateral root primordium (LRP) protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831108, updated on 18-Sep-2024

Summary

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Official Symbol
LRP1
Official Full Name
Lateral root primordium (LRP) protein-like protein
Primary source
TAIR:AT5G12330
Locus tag
AT5G12330
See related
Araport:AT5G12330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LATERAL ROOT PRIMORDIUM 1
Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
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Genomic context

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See LRP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (3987375..3989876, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene ankyrin repeat family protein Neighboring gene miscRNA Neighboring gene DUF4228 domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. Ullah H, et al. Plant Cell, 2003 Feb. PMID 12566580, Free PMC Article
  2. Regulation of root elongation by histone acetylation in Arabidopsis. Krichevsky A, et al. J Mol Biol, 2009 Jan 9. PMID 18835563, Free PMC Article
  3. Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner. Kuusk S, et al. Plant J, 2006 Jul. PMID 16740146
  4. SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Estornell LH, et al. Front Plant Sci, 2018. PMID 29491878, Free PMC Article
  5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203366.1
NM_121271.4
NM_203042.1
NM_203043.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within anther development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
Lateral root primordium (LRP) protein-like protein
NP_001190295.1
  • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2).
NP_568266.1
  • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974771.1
  • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974772.1
  • LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3987375..3989876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121271.4 → NP_568266.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568266.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K0X0, Q38848, Q3E9I3, Q94CK9
    UniProtKB/TrEMBL
    A0A178URJ4
    Conserved Domains (3) summary
    TIGR01623
    Location:112 → 153
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    TIGR01624
    Location:222 → 270
    LRP1_Cterm; LRP1 C-terminal domain
    pfam05142
    Location:112 → 271
    DUF702; Domain of unknown function (DUF702)

  2. NM_001203366.1 → NP_001190295.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190295.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G0H4
    Conserved Domains (3) summary
    TIGR01623
    Location:199 → 240
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    TIGR01624
    Location:309 → 357
    LRP1_Cterm; LRP1 C-terminal domain
    pfam05142
    Location:199 → 358
    DUF702; Domain of unknown function (DUF702)

  3. NM_203042.1 → NP_974771.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974771.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K0X0, Q38848, Q3E9I3, Q94CK9
    UniProtKB/TrEMBL
    A0A178URJ4
    Conserved Domains (3) summary
    TIGR01623
    Location:112 → 153
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    TIGR01624
    Location:222 → 270
    LRP1_Cterm; LRP1 C-terminal domain
    pfam05142
    Location:112 → 271
    DUF702; Domain of unknown function (DUF702)

  4. NM_203043.2 → NP_974772.1  Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974772.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94CK9
    Conserved Domains (2) summary
    TIGR01623
    Location:112 → 153
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    pfam05142
    Location:112 → 213
    DUF702; Domain of unknown function (DUF702)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94CK9.1

Gene LinkOut

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