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KIWI ssDNA-binding transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830784, updated on 18-Sep-2024

Summary

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Official Symbol
KIWI
Official Full Name
ssDNA-binding transcriptional regulator
Primary source
TAIR:AT5G09250
Locus tag
AT5G09250
See related
Araport:AT5G09250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2K12.10
Summary
putative transcriptional co-activator (KIWI) mRNA, complete
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Genomic context

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See KIWI in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (2875136..2876609, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sirtuin 2 Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene vacuolar protein sorting-associated protein 20.2 Neighboring gene uncharacterized protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis Novel Microgametophyte Defective Mutant 1 Is Required for Pollen Viability via Influencing Intine Development in Arabidopsis. Mi L, et al. Front Plant Sci, 2022. PMID 35498668, Free PMC Article
  2. Isolation of putative plant transcriptional coactivators using a modified two-hybrid system incorporating a GFP reporter gene. Cormack RS, et al. Plant J, 1998 Jun. PMID 9681033
  3. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001125722.2
NM_001343039.1
NM_001343040.1
NM_001343041.1
NM_120961.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in megagametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription initiation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ssDNA-binding transcriptional regulator
NP_001318516.1
  • KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Transcriptional coactivator p15 (InterPro:IPR003173); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_196487.1
  • KIWI; FUNCTIONS IN: protein binding, transcription coactivator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator p15 (InterPro:IPR003173), ssDNA-binding transcriptional regulator (InterPro:IPR009044); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT5G09240.1); Has 436 Blast hits to 424 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 177; Fungi - 115; Plants - 101; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2875136..2876609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120961.3 → NP_196487.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196487.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65154
    UniProtKB/TrEMBL
    A0A654FZZ8, Q0WS63
    Conserved Domains (1) summary
    pfam02229
    Location:48 → 95
    PC4; Transcriptional Coactivator p15 (PC4)

  2. NM_001343040.1 → NP_001332125.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG06

  3. NM_001343041.1 → NP_001332126.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFY1

  4. NM_001343039.1 → NP_001318516.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7G3, A0A384LE42, B3H688

  5. NM_001125722.2 → NP_001119194.1  ssDNA-binding transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119194.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7G3, A0A384LE42, B3H688
    Conserved Domains (1) summary
    pfam02229
    Location:48 → 81
    PC4; Transcriptional Coactivator p15 (PC4)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65154.1

Gene LinkOut

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