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AGAL1 alpha-galactosidase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830736, updated on 18-Sep-2024

Summary

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Official Symbol
AGAL1
Official Full Name
alpha-galactosidase 1
Primary source
TAIR:AT5G08380
Locus tag
AT5G08380
See related
Araport:AT5G08380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
alpha-galactosidase 1; AtAGAL1; F8L15.110; F8L15_110
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Genomic context

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See AGAL1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Sequence:
Chromosome: 5; NC_003076.8 (2694669..2697781, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene GRAM domain-containing protein / ABA-responsive protein-like protein Neighboring gene Stu1, putative (DUF789) Neighboring gene alpha-galactosidase 2 Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene structural maintenance of chromosomes-like protein, putative (DUF3531)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues. Imaizumi C, et al. J Exp Bot, 2017 Jul 20. PMID 28981776, Free PMC Article
  2. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  3. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
  4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At5g08380.1 role in the hydrolysis of beta-l-arabinopyranosyl residues
    Title: Heterologous expression and characterization of an Arabidopsis β-l-arabinopyranosidase and α-d-galactosidases acting on β-l-arabinopyranosyl residues.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_001342998.1
NM_120922.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-galactosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
alpha-galactosidase 1
NP_196455.1
  • alpha-galactosidase 1 (AGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1677 Blast hits to 1666 proteins in 372 species: Archae - 6; Bacteria - 673; Metazoa - 331; Fungi - 272; Plants - 227; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2694669..2697781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120922.5 → NP_196455.1  alpha-galactosidase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196455.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWB9, Q9FT97
    UniProtKB/TrEMBL
    A0A178UB94, A0A5S9Y375, A0A654FZD1
    Conserved Domains (1) summary
    PLN02692
    Location:1 → 410
    PLN02692; alpha-galactosidase

  2. NM_001342998.1 → NP_001332077.1  alpha-galactosidase 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFT2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FT97.1

Gene LinkOut

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