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GRP20 glycine-rich protein 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830649, updated on 18-Sep-2024

Summary

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Official Symbol
GRP20
Official Full Name
glycine-rich protein 20
Primary source
TAIR:AT5G07560
Locus tag
AT5G07560
See related
Araport:AT5G07560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATGRP20; glycine-rich protein 20; T2I1.270; T2I1_270
Summary
Lipid-binding oleosins, glycine-rich protein.
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Genomic context

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See GRP20 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (2390207..2391439, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein 16 Neighboring gene glycine-rich protein 19 Neighboring gene glycine/proline-rich protein Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene families from the Arabidopsis thaliana pollen coat proteome. Mayfield JA, et al. Science, 2001 Jun 29. PMID 11431566
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_120838.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables mRNA CDS binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in monolayer-surrounded lipid storage body IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
glycine-rich protein 20
NP_196373.1
  • glycine-rich protein 20 (GRP20); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid storage, sexual reproduction; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: Oleosin family protein (TAIR:AT5G07571.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2390207..2391439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120838.4 → NP_196373.1  glycine-rich protein 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196373.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJU8, Q94FR2, Q9LY07
    Conserved Domains (1) summary
    pfam01277
    Location:44 → 111
    Oleosin
Nucleotide Protein
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