SAUR15 SAUR-like auxin-responsive protein family [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: SAUR15
Gene description: SAUR-like auxin-responsive protein family
Primary source: Araport:AT4G38850
Locus tag: AT4G38850
See related: TAIR:AT4G38850
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARABIDOPSIS COLUMBIA SAUR GENE 1; ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15; ATSAUR15; F19H22.6; SAUR-AC1; SAUR_AC1; SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA; SMALL AUXIN UPREGULATED 15
Summary: mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.
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Genomic context

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See SAUR15 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (18126057..18126829)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Genetic variations in ZmSAUR15 contribute to the formation of immature embryo-derived embryonic calluses in maize.
Title: Genetic variations in ZmSAUR15 contribute to the formation of immature embryo-derived embryonic calluses in maize.
A Short Promoter Region Is Sufficient for Normal Auxin Response and Localization of SAUR15
Title: Bipartite promoter element required for auxin response.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_120045.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within response to auxin	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SAUR-like auxin-responsive protein family

NP_195596.1

SMALL AUXIN UPREGULATED 15 (SAUR15); CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT5G18050.1); Has 1222 Blast hits to 1213 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1221; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

18126057..18126829

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120045.3 → NP_195596.1 SAUR-like auxin-responsive protein family [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195596.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q41220

UniProtKB/TrEMBL

A0A178UUZ8, A0A5S9XZV8

Conserved Domains (1) summary

cl23790
Location:15 → 89

Auxin_inducible; Auxin responsive protein