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GGR geranylgeranyl reductase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830002, updated on 18-Sep-2024

Summary

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Official Symbol
GGR
Official Full Name
geranylgeranyl reductase
Primary source
TAIR:AT4G38460
Locus tag
AT4G38460
See related
Araport:AT4G38460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtSSU; geranylgeranyl reductase; small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase; SSU
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Genomic context

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See GGR in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (17994739..17996222)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene rho guanyl-nucleotide exchange factor 1 Neighboring gene RPAP1-like, carboxy-terminal protein Neighboring gene ncRNA Neighboring gene ACT-like protein tyrosine kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Heteromeric Geranyl(geranyl) Diphosphate Synthase Is Involved in Monoterpene Biosynthesis in Arabidopsis Flowers. Chen Q, et al. Mol Plant, 2015 Sep. PMID 25958235
  2. Heterodimeric geranyl(geranyl)diphosphate synthase from hop (Humulus lupulus) and the evolution of monoterpene biosynthesis. Wang G, et al. Proc Natl Acad Sci U S A, 2009 Jun 16. PMID 19482937, Free PMC Article
  3. Functional analysis of light-harvesting-like protein 3 (LIL3) and its light-harvesting chlorophyll-binding motif in Arabidopsis. Takahashi K, et al. J Biol Chem, 2014 Jan 10. PMID 24275650, Free PMC Article
  4. LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis. Tanaka R, et al. Proc Natl Acad Sci U S A, 2010 Sep 21. PMID 20823244, Free PMC Article
  5. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_120007.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
contributes_to dimethylallyltranstransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
NOT enables farnesyltranstransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within monoterpene biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl reductase
NP_195558.1
  • geranylgeranyl reductase (GGR); INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 1 (TAIR:AT4G36810.1); Has 14555 Blast hits to 14554 proteins in 2890 species: Archae - 343; Bacteria - 9127; Metazoa - 134; Fungi - 165; Plants - 435; Viruses - 12; Other Eukaryotes - 4339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17994739..17996222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120007.4 → NP_195558.1  geranylgeranyl reductase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195558.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39108, Q9FPK0, Q9SZM6
    UniProtKB/TrEMBL
    A0A178V3P7, A0A5S9XZS0, A0A654FWN7
    Conserved Domains (1) summary
    COG0142
    Location:55 → 263
    IspA; Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39108.2

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