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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 829663, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT4G35110
Locus tag
AT4G35110
See related
TAIR:AT4G35110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12J5.14
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (16712280..16715114, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane intrinsic protein 3 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085025.2
NM_001125647.2
NM_001342325.1
NM_001342326.1
NM_119677.3
NM_179164.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phospholipase-like protein (PEARLI 4) family protein
NP_001078494.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 679 Blast hits to 588 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 141; Fungi - 40; Plants - 275; Viruses - 32; Other Eukaryotes - 107 (source: NCBI BLink).
NP_001119119.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_195237.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).
NP_849495.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16712280..16715114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179164.2 → NP_849495.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849495.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
    Conserved Domains (1) summary
    pfam05278
    Location:161 → 384
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  2. NM_001125647.2 → NP_001119119.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119119.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FVN7, B3H7D4
    Conserved Domains (1) summary
    pfam05278
    Location:173 → 396
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  3. NM_001342325.1 → NP_001329328.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
    Conserved Domains (1) summary
    pfam05278
    Location:161 → 384
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  4. NM_001085025.2 → NP_001078494.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078494.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XYT3, A0A654FVN7, A8MQE1
    Conserved Domains (1) summary
    pfam05278
    Location:176 → 399
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  5. NM_119677.3 → NP_195237.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195237.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
    Conserved Domains (1) summary
    pfam05278
    Location:161 → 384
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  6. NM_001342326.1 → NP_001329327.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
    Conserved Domains (1) summary
    pfam05278
    Location:161 → 384
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)
Nucleotide Protein
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