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SQD1 sulfoquinovosyldiacylglycerol 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829440, updated on 18-Sep-2024

Summary

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Official Symbol
SQD1
Official Full Name
sulfoquinovosyldiacylglycerol 1
Primary source
TAIR:AT4G33030
Locus tag
AT4G33030
See related
Araport:AT4G33030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4I10.6; sulfoquinovosyldiacylglycerol 1; UDP-SULFOQUINOVOSE SYNTHASE
Summary
involved in sulfolipid biosynthesis
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Genomic context

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See SQD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (15935373..15937833)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene calcineurin B-like protein 10 Neighboring gene glycine decarboxylase P-protein 1 Neighboring gene ZIP metal ion transporter family Neighboring gene Thioredoxin superfamily protein Neighboring gene calmodulin-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recombinant Arabidopsis SQD1 converts udp-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose in vitro. Sanda S, et al. J Biol Chem, 2001 Feb 9. PMID 11073956
  2. Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana. Essigmann B, et al. Proc Natl Acad Sci U S A, 1998 Feb 17. PMID 9465123, Free PMC Article
  3. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Catarecha P, et al. Plant Cell, 2007 Mar. PMID 17400898, Free PMC Article
  4. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
  5. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119457.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables UDPsulfoquinovose synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables UDPsulfoquinovose synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding HDA PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within glycolipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within sulfolipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
sulfoquinovosyldiacylglycerol 1
NP_195029.1
  • sulfoquinovosyldiacylglycerol 1 (SQD1); FUNCTIONS IN: UDPsulfoquinovose synthase activity, sulfotransferase activity, zinc ion binding; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 10748 Blast hits to 10748 proteins in 2398 species: Archae - 273; Bacteria - 7931; Metazoa - 289; Fungi - 89; Plants - 466; Viruses - 5; Other Eukaryotes - 1695 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15935373..15937833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119457.4 → NP_195029.1  sulfoquinovosyldiacylglycerol 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195029.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48917
    UniProtKB/TrEMBL
    A0A178V3D8, A0A5S9XZ02, A0A654FVF1
    Conserved Domains (1) summary
    PLN02572
    Location:62 → 477
    PLN02572; UDP-sulfoquinovose synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48917.1

Gene LinkOut

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