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keratin-associated protein (DUF1218) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829241, updated on 18-Sep-2024

Summary

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Official Full Name
keratin-associated protein (DUF1218)
Primary source
TAIR:AT4G31130
Locus tag
AT4G31130
See related
Araport:AT4G31130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6E21.50; F6E21_50
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (15136909..15138871, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Wall-associated kinase family protein Neighboring gene DUF1997 family protein, putative (DUF1997) Neighboring gene SHK1 binding protein 1 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene endonuclease V family protein Neighboring gene DDB1-CUL4 associated factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119263.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
keratin-associated protein (DUF1218)
NP_194842.1
  • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15136909..15138871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119263.5 → NP_194842.1  keratin-associated protein (DUF1218) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194842.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2H8, Q9M089
    Conserved Domains (1) summary
    pfam06749
    Location:59 → 155
    DUF1218; Protein of unknown function (DUF1218)
Nucleotide Protein
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