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PLA2-GAMMA Phospholipase A2 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829067, updated on 18-Sep-2024

Summary

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Official Symbol
PLA2-GAMMA
Official Full Name
Phospholipase A2 family protein
Primary source
TAIR:AT4G29460
Locus tag
AT4G29460
See related
Araport:AT4G29460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17A13.280; F17A13_280; phospholipase A2 gamma
Summary
Encodes one of the four Arabidopsis phospholipase PLA2 parologs: AT2G06925 (PLA2-ALPHA), AT2G19690 (PLA2-BETA), AT4G29460 (PLA2-GAMMA) and AT4G29470 (PLA2-DELTA). Involved in pollen development and germination and tube growth.
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Genomic context

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See PLA2-GAMMA in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (14482815..14483936, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Phospholipase A2 family protein Neighboring gene Mitochondrial ATP synthase subunit G protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Arabidopsis secretory phospholipase A2-gamma cDNA and its enzymatic properties. Bahn SC, et al. FEBS Lett, 2003 Oct 9. PMID 14550557
  2. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Nguyen HT, et al. Plant Cell Physiol, 2016 Apr. PMID 26872838
  3. Endoplasmic reticulum- and Golgi-localized phospholipase A2 plays critical roles in Arabidopsis pollen development and germination. Kim HJ, et al. Plant Cell, 2011 Jan. PMID 21278126, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At4g29460 (PLA2-gamma) expression is regulated by At2g20400 (gammaMYB1) with the assistance of its co-activator AT2G20400 (gammaMYB2).
    Title: A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
  2. PLA(2) paralogs -beta, -gamma, and -delta expressed during pollen development, localize to the endoplasmic reticulum and/or Golgi, and play critical roles in pollen development and germination and tube growth.
    Title: Endoplasmic reticulum- and Golgi-localized phospholipase A2 plays critical roles in Arabidopsis pollen development and germination.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_119091.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase A2 activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in arachidonate secretion IEA
Inferred from Electronic Annotation
more info
  
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pollen germination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in pollen tube growth IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phospholipase A2 family protein
NP_194675.1
  • Phospholipase A2 family protein; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, active site (InterPro:IPR013090); BEST Arabidopsis thaliana protein match is: Phospholipase A2 family protein (TAIR:AT4G29470.1); Has 273 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 21; Metazoa - 140; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14482815..14483936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119091.3 → NP_194675.1  Phospholipase A2 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194675.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M0D7
    UniProtKB/TrEMBL
    A0A178UYZ6, A0A5S9XXQ8, A0A654FU17
    Conserved Domains (1) summary
    cd04706
    Location:23 → 139
    PLA2_plant; Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M0D7.1

Gene LinkOut

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