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LOC8288334 zinc finger protein CONSTANS-LIKE 9 [ Ricinus communis (castor bean) ]

Gene ID: 8288334, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8288334
Gene description
zinc finger protein CONSTANS-LIKE 9
Locus tag
RCOM_1213200
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 7 NC_063262.1 (26285700..26291484)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994445.1 (323949..329850)

Chromosome 7 - NC_063262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8288332 Neighboring gene uncharacterized LOC8288333 Neighboring gene RRP15-like protein Neighboring gene probable E3 ubiquitin-protein ligase XERICO

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein CONSTANS-LIKE 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063262.1 Reference ASM1957865v1

    Range
    26285700..26291484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002524552.4 → XP_002524598.2  zinc finger protein CONSTANS-LIKE 9 isoform X2

    Conserved Domains (3) summary
    smart00336
    Location:5 → 47
    BBOX; B-Box-type zinc finger
    cd00021
    Location:47 → 90
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    pfam06203
    Location:357 → 400
    CCT; CCT motif

  2. XM_048376631.1 → XP_048232588.1  zinc finger protein CONSTANS-LIKE 9 isoform X1

    UniProtKB/TrEMBL
    B9SF29
    Conserved Domains (2) summary
    cd19821
    Location:4 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:357 → 400
    CCT; CCT motif

  3. XM_048376632.1 → XP_048232589.1  zinc finger protein CONSTANS-LIKE 9 isoform X3

  4. XM_048376633.1 → XP_048232590.1  zinc finger protein CONSTANS-LIKE 9 isoform X3

Nucleotide Protein
Heading Accession and Version

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