U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZIM GATA-type zinc finger protein with TIFY domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828549, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ZIM
Official Full Name
GATA-type zinc finger protein with TIFY domain-containing protein
Primary source
TAIR:AT4G24470
Locus tag
AT4G24470
See related
Araport:AT4G24470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTIFY1; GATA TRANSCRIPTION FACTOR 25; GATA25; T22A6.300; T22A6_300; TIFY1; Zinc-finger protein expressed in Inflorescence Meristem
Summary
ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ZIM in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (12645542..12647985)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene phosphoglucan, water dikinase Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 2 Neighboring gene Protein kinase superfamily protein Neighboring gene RAB geranylgeranyl transferase alpha subunit 1 Neighboring gene hydroxyproline-rich glycoprotein family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family. Shikata M, et al. J Exp Bot, 2004 Mar. PMID 14966217
  2. Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Nishii A, et al. Biosci Biotechnol Biochem, 2000 Jul. PMID 10945256
  3. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
  4. A stele-enriched gene regulatory network in the Arabidopsis root. Brady SM, et al. Mol Syst Biol, 2011 Jan 18. PMID 21245844, Free PMC Article
  5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001203892.1
NM_118580.4
NM_179104.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
GATA-type zinc finger protein with TIFY domain-containing protein
NP_001190821.1
  • TIFY1; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2).
NP_194178.1
  • TIFY1; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 1524 Blast hits to 1503 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 686; Plants - 776; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
NP_849435.1
  • Zinc-finger protein expressed in Inflorescence Meristem (ZIM); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Tify (InterPro:IPR010399), CCT domain (InterPro:IPR010402), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: ZIM-LIKE 2 (TAIR:AT1G51600.2); Has 1524 Blast hits to 1503 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 686; Plants - 776; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12645542..12647985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179104.3 → NP_849435.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849435.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNU9, Q9LRH6, Q9STU8
    UniProtKB/TrEMBL
    A0A178V1K9
    Conserved Domains (4) summary
    smart00979
    Location:77 → 112
    TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
    smart00401
    Location:209 → 261
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:213 → 259
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam06203
    Location:146 → 189
    CCT; CCT motif

  2. NM_118580.4 → NP_194178.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194178.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNU9, Q9LRH6, Q9STU8
    UniProtKB/TrEMBL
    A0A178V1K9
    Conserved Domains (4) summary
    smart00979
    Location:77 → 112
    TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
    smart00401
    Location:209 → 261
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:213 → 259
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam06203
    Location:146 → 189
    CCT; CCT motif

  3. NM_001203892.1 → NP_001190821.1  GATA-type zinc finger protein with TIFY domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190821.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1K9, A0A5S9XVG4, F4JQX4
    Conserved Domains (3) summary
    smart00979
    Location:77 → 112
    TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
    smart00401
    Location:209 → 261
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam06203
    Location:146 → 189
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRH6.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools