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Sodium Bile acid symporter family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828383, updated on 18-Sep-2024

Summary

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Official Full Name
Sodium Bile acid symporter family
Primary source
TAIR:AT4G22840
Locus tag
AT4G22840
See related
Araport:AT4G22840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H19.20
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (11991497..11993809, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene YCF49-like protein Neighboring gene SNARE associated Golgi protein family Neighboring gene Cell cycle regulated microtubule associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bile Acid Sodium Symporter BASS6 Can Transport Glycolate and Is Involved in Photorespiratory Metabolism in Arabidopsis thaliana. South PF, et al. Plant Cell, 2017 Apr. PMID 28351992, Free PMC Article
  2. The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana. Gigolashvili T, et al. Plant Cell, 2009 Jun. PMID 19542295, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_118413.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycolate transmembrane transporter activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables glycolate transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within glycolate transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within photorespiration IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Sodium Bile acid symporter family
NP_567671.1
  • Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid transporter 5 (TAIR:AT4G12030.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11991497..11993809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118413.3 → NP_567671.1  Sodium Bile acid symporter family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567671.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49665, Q8VYY4
    UniProtKB/TrEMBL
    A0A178UXQ5, A0A5S9XV15
    Conserved Domains (1) summary
    COG0385
    Location:100 → 403
    YfeH; Predicted Na+-dependent transporter [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYY4.1

Gene LinkOut

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