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HAM3 GRAS family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828208, updated on 18-Sep-2024

Summary

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Official Symbol
HAM3
Official Full Name
GRAS family transcription factor
Primary source
TAIR:AT4G00150
Locus tag
AT4G00150
See related
Araport:AT4G00150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA HAIRY MERISTEM 3; ATHAM3; F6N15.20; F6N15_20; HAIRY MERISTEM 3; LOM3; LOST MERISTEMS 3; SCL6-IV
Summary
Belongs to one of the LOM (LOST MERISTEMS) genes: AT2G45160 (LOM1), AT3G60630 (LOM2) and AT4G00150 (LOM3). LOM1 and LOM2 promote cell differentiation at the periphery of shoot meristems and help to maintain their polar organization.
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Genomic context

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See HAM3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (57140..59495, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene Calcium-binding EF-hand family protein Neighboring gene retrotransposon Gag Neighboring gene F-box/RNI-like/FBD-like domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A root-knot nematode secretory peptide functions as a ligand for a plant transcription factor. Huang G, et al. Mol Plant Microbe Interact, 2006 May. PMID 16673933
  2. Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy. Engstrom EM, et al. Plant Physiol, 2011 Feb. PMID 21173022, Free PMC Article
  3. Control of plant stem cell function by conserved interacting transcriptional regulators. Zhou Y, et al. Nature, 2015 Jan 15. PMID 25363783, Free PMC Article
  4. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Li G, et al. Nat Cell Biol, 2011 May. PMID 21499259
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtHAM1, AtHAM2, and AtHAM3 are expressed in apical meristems and in differentiating and mature tissues of both shoot and root.
    Title: Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_116232.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within root hair cell tip growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GRAS family transcription factor
NP_191926.1
  • HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    57140..59495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116232.5 → NP_191926.1  GRAS family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191926.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B2CV54, O81316, Q9SYQ4
    UniProtKB/TrEMBL
    A0A178V088, A0A5S9XNG5, A0A654FKG0
    Conserved Domains (1) summary
    pfam03514
    Location:205 → 554
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81316.1

Gene LinkOut

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