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C2H2-like zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827362, updated on 18-Sep-2024

Summary

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Official Full Name
C2H2-like zinc finger protein
Primary source
TAIR:AT4G16610
Locus tag
AT4G16610
See related
Araport:AT4G16610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4330C; FCAALL.418
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (9354241..9355326, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like A01 Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117762.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
C2H2-like zinc finger protein
NP_193394.1
  • C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1); Has 282 Blast hits to 280 proteins in 53 species: Archae - 0; Bacteria - 4; Metazoa - 52; Fungi - 13; Plants - 204; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9354241..9355326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117762.3 → NP_193394.1  C2H2-like zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193394.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XV20, A0A654FQ64, A0A7G2F320, O23504
    Conserved Domains (1) summary
    pfam13912
    Location:5 → 27
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
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