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LOC8272313 transcription factor CYCLOIDEA [ Ricinus communis (castor bean) ]

Gene ID: 8272313, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8272313
Gene description
transcription factor CYCLOIDEA
Locus tag
RCOM_1569020
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8272313 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (17943131..17948623, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994377.1 (167986..173239)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g32220, chloroplastic Neighboring gene probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene translation initiation factor eIF-2B subunit delta Neighboring gene uncharacterized LOC125370139 Neighboring gene small polypeptide DEVIL 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor CYCLOIDEA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    17943131..17948623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002521155.4 → XP_002521201.1  transcription factor CYCLOIDEA

    See identical proteins and their annotated locations for XP_002521201.1

    UniProtKB/TrEMBL
    B9S5D2
    Conserved Domains (1) summary
    pfam03634
    Location:94 → 220
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version

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