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Polyketide cyclase/dehydrase and lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827097, updated on 18-Sep-2024

Summary

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Official Full Name
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Primary source
TAIR:AT4G14500
Locus tag
AT4G14500
See related
Araport:AT4G14500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3290W; FCAALL.198
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (8334055..8337640)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene SMAD/FHA domain-containing protein Neighboring gene ncRNA Neighboring gene CRM family member 3B Neighboring gene DNA-directed RNA polymerase II-like protein Neighboring gene agamous-like MADS-box protein Neighboring gene nuclear factor Y, subunit B3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001160761.2
NM_117530.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Polyketide cyclase/dehydrase and lipid transport superfamily protein
NP_001154233.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 214 Blast hits to 213 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_567433.1
  • Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G23080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8334055..8337640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160761.2 → NP_001154233.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154233.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JVH0
    Conserved Domains (1) summary
    cl14643
    Location:137 → 268
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  2. NM_117530.3 → NP_567433.1  Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567433.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178USD2, A0A5S9XSB7, A0A654FP60, Q944M2
    Conserved Domains (1) summary
    cd08870
    Location:137 → 345
    START_STARD2_7-like; Lipid-binding START domain of mammalian STARD2, -7, and related proteins
Nucleotide Protein
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