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LOC8270850 transcription factor TGA6 [ Ricinus communis (castor bean) ]

Gene ID: 8270850, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8270850
Gene description
transcription factor TGA6
Locus tag
RCOM_1451970
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8270850 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 8 NC_063263.1 (13352044..13359968, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994282.1 (1954118..1962004, complement)

Chromosome 8 - NC_063263.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP22 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 Neighboring gene DNA replication complex GINS protein PSF3 Neighboring gene sigma factor binding protein 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063263.1 Reference ASM1957865v1

    Range
    13352044..13359968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002512981.4 → XP_002513027.1  transcription factor TGA6

    See identical proteins and their annotated locations for XP_002513027.1

    UniProtKB/TrEMBL
    B9RG75
    Conserved Domains (2) summary
    cd14708
    Location:178 → 230
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:260 → 336
    DOG1; Seed dormancy control
Nucleotide Protein
Heading Accession and Version

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