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LOC8269822 homeobox protein knotted-1-like 1 [ Ricinus communis (castor bean) ]

Gene ID: 8269822, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8269822
Gene description
homeobox protein knotted-1-like 1
Locus tag
RCOM_1435170
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8269822 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (12920008..12924667, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994281.1 (1653874..1658459, complement)

Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8269820 Neighboring gene nicotianamine synthase Neighboring gene uncharacterized LOC125368638 Neighboring gene protein SEMI-ROLLED LEAF 2 Neighboring gene RNA polymerase II-associated protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063265.1 Reference ASM1957865v1

    Range
    12920008..12924667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002512465.4 → XP_002512511.1  homeobox protein knotted-1-like 1

    See identical proteins and their annotated locations for XP_002512511.1

    UniProtKB/TrEMBL
    B9RFJ2
    Conserved Domains (4) summary
    pfam03789
    Location:209 → 230
    ELK; ELK domain
    pfam03790
    Location:67 → 106
    KNOX1; KNOX1 domain
    pfam03791
    Location:117 → 164
    KNOX2; KNOX2 domain
    pfam05920
    Location:249 → 288
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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