U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RAP74 transcription initiation factor IIF subunit alpha RAP74 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826874, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
RAP74
Official Full Name
transcription initiation factor IIF subunit alpha RAP74
Primary source
TAIR:AT4G12610
Locus tag
AT4G12610
See related
Araport:AT4G12610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRAP74; T1P17.200; T1P17_200
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RAP74 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (7454722..7458422)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene B3 domain protein Neighboring gene origin of replication complex 1B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Bang W, et al. Plant Physiol, 2006 Oct. PMID 16905668, Free PMC Article
  2. Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance. Li HJ, et al. Plant Cell, 2015 Oct. PMID 26462908, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001340791.1
NM_001340792.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
transcription initiation factor IIF subunit alpha RAP74
NP_001319913.1
  • RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 33758 Blast hits to 21623 proteins in 1111 species: Archae - 118; Bacteria - 4904; Metazoa - 11974; Fungi - 5901; Plants - 2006; Viruses - 435; Other Eukaryotes - 8420 (source: NCBI BLink).
NP_001319914.1
  • RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding, transcription activator activity, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 34394 Blast hits to 22751 proteins in 1168 species: Archae - 120; Bacteria - 4390; Metazoa - 12539; Fungi - 6082; Plants - 2082; Viruses - 445; Other Eukaryotes - 8736 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7454722..7458422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340791.1 → NP_001319913.1  transcription initiation factor IIF subunit alpha RAP74 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V535, A0A5S9XRQ9
    Conserved Domains (1) summary
    pfam05793
    Location:48 → 542
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

  2. NM_001340792.1 → NP_001319914.1  transcription initiation factor IIF subunit alpha RAP74 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JRD5, F4JRD6, Q6S7B9, Q9SU25
    UniProtKB/TrEMBL
    A0A654FNI8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SU25.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools