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PLDGAMMA2 phospholipase D gamma 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826789, updated on 18-Sep-2024

Summary

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Official Symbol
PLDGAMMA2
Official Full Name
phospholipase D gamma 2
Primary source
TAIR:AT4G11830
Locus tag
AT4G11830
See related
Araport:AT4G11830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT4G11835; phospholipase D gamma 2; T26M18.40; T26M18_40
Summary
Encodes one of three phospholipase D enzymes of the gamma class.
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Genomic context

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See PLDGAMMA2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (7115681..7121919, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein Neighboring gene hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase Neighboring gene phospholipase D gamma 3 Neighboring gene Interleukin-1 receptor-associated kinase 4 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana. Zhao J, et al. PLoS One, 2011. PMID 22163277, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001340736.1
NM_001340737.1
NM_117252.6
NM_179208.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase D activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within membrane lipid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phospholipid catabolic process TAS
Traceable Author Statement
more info
  
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosolic ribosome HDA PubMed 

General protein information

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Preferred Names
phospholipase D gamma 2
NP_192920.3
  • phospholipase D gamma 2 (PLDGAMMA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: cytosolic ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2065 Blast hits to 1596 proteins in 399 species: Archae - 2; Bacteria - 528; Metazoa - 398; Fungi - 435; Plants - 545; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
NP_849539.1
  • phospholipase D gamma 2 (PLDGAMMA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: cytosolic ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2194 Blast hits to 1721 proteins in 407 species: Archae - 2; Bacteria - 532; Metazoa - 481; Fungi - 448; Plants - 557; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7115681..7121919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179208.3 → NP_849539.1  phospholipase D gamma 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849539.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FNI6
    Conserved Domains (4) summary
    PLN03008
    Location:51 → 823
    PLN03008; Phospholipase D delta
    pfam12357
    Location:747 → 815
    PLD_C; Phospholipase D C terminal
    cl14603
    Location:31 → 152
    C2; C2 domain
    cl15239
    Location:502 → 720
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  2. NM_001340736.1 → NP_001328718.1  phospholipase D gamma 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5I3

  3. NM_117252.6 → NP_192920.3  phospholipase D gamma 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192920.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3EA52, Q9T051, Q9XH77
    UniProtKB/TrEMBL
    A0A654FNI6
    Conserved Domains (4) summary
    cd04015
    Location:33 → 184
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    PLN03008
    Location:31 → 855
    PLN03008; Phospholipase D delta
    pfam12357
    Location:779 → 847
    PLD_C; Phospholipase D C terminal
    cl15239
    Location:534 → 752
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  4. NM_001340737.1 → NP_001328719.1  phospholipase D gamma 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5J2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9T051.3

Gene LinkOut

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