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SGNH hydrolase-type esterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826694, updated on 18-Sep-2024

Summary

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Official Full Name
SGNH hydrolase-type esterase superfamily protein
Primary source
TAIR:AT4G10950
Locus tag
AT4G10950
See related
Araport:AT4G10950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25I24.160; F25I24_160
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (6711386..6713512, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene RING/U-box protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A GDSL-type esterase/lipase gene, GELP77, is necessary for pollen dissociation and fertility in Arabidopsis. Tsugama D, et al. Biochem Biophys Res Commun, 2020 Jun 11. PMID 32305137
  2. Slowing development restores the fertility of thermo-sensitive male-sterile plant lines. Zhu J, et al. Nat Plants, 2020 Apr. PMID 32231254
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340696.1
NM_117164.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SGNH hydrolase-type esterase superfamily protein
NP_567372.1
  • SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G08460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6711386..6713512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117164.2 → NP_567372.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567372.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FN43, F4JN67
    Conserved Domains (1) summary
    cd01837
    Location:70 → 384
    SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...

  2. NM_001340696.1 → NP_001329284.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B785, A0A654FN43
    Conserved Domains (1) summary
    cd01837
    Location:70 → 388
    SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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