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LOC8264642 transcription factor bHLH49 [ Ricinus communis (castor bean) ]

Gene ID: 8264642, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8264642
Gene description
transcription factor bHLH49
Locus tag
RCOM_1466300
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8264642 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (24164450..24169261)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994292.1 (428047..432836)

Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene putative defensin-like protein 263 Neighboring gene putative defensin-like protein 298 Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930 Neighboring gene uncharacterized LOC8264644 Neighboring gene amino acid transporter AVT6A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063259.1 Reference ASM1957865v1

    Range
    24164450..24169261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015716566.3 → XP_015572052.2  transcription factor bHLH49 isoform X3

  2. XM_015716564.3 → XP_015572050.2  transcription factor bHLH49 isoform X2

  3. XM_015716565.3 → XP_015572051.2  transcription factor bHLH49 isoform X4

  4. XM_002514520.4 → XP_002514566.2  transcription factor bHLH49 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials