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LOC8258138 transcription factor MYB1R1 [ Ricinus communis (castor bean) ]

Gene ID: 8258138, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8258138
Gene description
transcription factor MYB1R1
Locus tag
RCOM_1512870
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8258138 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (26114526..26116453, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994278.1 (4089697..4091677)

Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase AtPK2/AtPK19-like Neighboring gene uncharacterized LOC112536382 Neighboring gene pentatricopeptide repeat-containing protein At1g74850, chloroplastic Neighboring gene uncharacterized LOC8258136

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to gibberellin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB1R1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063259.1 Reference ASM1957865v1

    Range
    26114526..26116453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002511432.4 → XP_002511478.1  transcription factor MYB1R1

    See identical proteins and their annotated locations for XP_002511478.1

    UniProtKB/TrEMBL
    B9R903
    Conserved Domains (2) summary
    smart00717
    Location:106 → 153
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cl21498
    Location:104 → 153
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
Heading Accession and Version

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