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Saposin-like aspartyl protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825776, updated on 18-Sep-2024

Summary

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Official Full Name
Saposin-like aspartyl protease family protein
Primary source
TAIR:AT4G04460
Locus tag
AT4G04460
See related
Araport:AT4G04460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T26N6.7; T26N6_7
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (2224422..2227874)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene WRKY family transcription factor Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene F-box protein with a domain protein Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 36

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Leaf proteome responses of Arabidopsis thaliana exposed to mild cadmium stress. Semane B, et al. J Plant Physiol, 2010 Mar 1. PMID 20005002
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203742.1
NM_116684.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to cadmium ion IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Saposin-like aspartyl protease family protein
NP_001190671.1
  • Saposin-like aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase aspartic (InterPro:IPR021109), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic proteinase A1 (TAIR:AT1G11910.1).
NP_192355.1
  • Saposin-like aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartic proteinase A1 (TAIR:AT1G11910.1); Has 6789 Blast hits to 4881 proteins in 419 species: Archae - 0; Bacteria - 8; Metazoa - 3731; Fungi - 1673; Plants - 537; Viruses - 0; Other Eukaryotes - 840 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2224422..2227874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203742.1 → NP_001190671.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190671.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6K3, A0A5S9XPZ8, A0A7G2EW99, F4JGD2
    Conserved Domains (5) summary
    cd06098
    Location:77 → 502
    phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
    smart00741
    Location:316 → 349
    SapB; Saposin (B) Domains
    pfam00026
    Location:86 → 503
    Asp; Eukaryotic aspartyl protease
    pfam03489
    Location:322 → 349
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:378 → 412
    SapB_1; Saposin-like type B, region 1

  2. NM_116684.4 → NP_192355.1  Saposin-like aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192355.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XEC4
    UniProtKB/TrEMBL
    A0A178V6K3, A0A5S9XPZ8, A0A654FLW7, A0A7G2EW99
    Conserved Domains (3) summary
    cd06098
    Location:77 → 506
    phytepsin; Phytepsin, a plant homolog of mammalian lysosomal pepsins
    pfam03489
    Location:321 → 353
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:382 → 417
    SapB_1; Saposin-like type B, region 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XEC4.1

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