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DHHC-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825251, updated on 18-Sep-2024

Summary

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Official Full Name
DHHC-type zinc finger family protein
Primary source
TAIR:AT3G60800
Locus tag
AT3G60800
See related
Araport:AT3G60800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (22467114..22469623, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1442) Neighboring gene F-box family protein Neighboring gene tRNA-Lys Neighboring gene DUF1499 family protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Precocious leaf senescence by functional loss of PROTEIN S-ACYL TRANSFERASE14 involves the NPR1-dependent salicylic acid signaling. Zhao XY, et al. Sci Rep, 2016 Feb 4. PMID 26842807, Free PMC Article
  2. Protein S-Acyltransferase 14: A Specific Role for Palmitoylation in Leaf Senescence in Arabidopsis. Li Y, et al. Plant Physiol, 2016 Jan. PMID 26537563, Free PMC Article
  3. Two homologous protein S-acyltransferases, PAT13 and PAT14, cooperatively regulate leaf senescence in Arabidopsis. Lai J, et al. J Exp Bot, 2015 Oct. PMID 26160582
  4. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115944.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein-cysteine S-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein-cysteine S-acyltransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within leaf senescence IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of reactive oxygen species metabolic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in Golgi trans cisterna IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in early endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DHHC-type zinc finger family protein
NP_191639.2
  • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G22750.1); Has 5091 Blast hits to 5089 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 2186; Fungi - 767; Plants - 823; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22467114..22469623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115944.4 → NP_191639.2  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191639.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYP5, Q9LZY3
    UniProtKB/TrEMBL
    A0A178VIL0, A0A5S9XMW6, A0A7G2EVN7
    Conserved Domains (1) summary
    cl19890
    Location:63 → 283
    DHHC; DHHC palmitoyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYP5.1

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