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Phosphoinositide-specific phospholipase C family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824760, updated on 18-Sep-2024

Summary

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Official Full Name
Phosphoinositide-specific phospholipase C family protein
Primary source
TAIR:AT3G55940
Locus tag
AT3G55940
See related
Araport:AT3G55940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (20747629..20750408)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor Neighboring gene pre-mRNA-splicing factor Neighboring gene CRINKLY4 related 3 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_115452.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Phosphoinositide-specific phospholipase C family protein
NP_191153.1
  • Phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase C 2 (TAIR:AT3G08510.2); Has 7225 Blast hits to 3392 proteins in 352 species: Archae - 10; Bacteria - 635; Metazoa - 3351; Fungi - 1029; Plants - 675; Viruses - 45; Other Eukaryotes - 1480 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20747629..20750408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115452.2 → NP_191153.1  Phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191153.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LY51
    UniProtKB/TrEMBL
    A0A5S9XLZ5
    Conserved Domains (4) summary
    cd00275
    Location:454 → 583
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    PLN02222
    Location:1 → 584
    PLN02222; phosphoinositide phospholipase C 2
    pfam09279
    Location:26 → 102
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    cl14615
    Location:102 → 426
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LY51.1

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