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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 824592, updated on 11-Sep-2024

Summary

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Primary source
TAIR:AT3G54250
Locus tag
AT3G54250
See related
Araport:AT3G54250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (20082046..20084762, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GRAS family transcription factor Neighboring gene suppressor of abi3-5 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 36 Neighboring gene sucrose-6F-phosphate phosphohydrolase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Orthologs of the archaeal isopentenyl phosphate kinase regulate terpenoid production in plants. Henry LK, et al. Proc Natl Acad Sci U S A, 2015 Aug 11. PMID 26216978, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001339656.1
NM_115285.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables diphosphomevalonate decarboxylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables diphosphomevalonate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GHMP kinase family protein
NP_566995.1
  • GHMP kinase family protein; FUNCTIONS IN: diphosphomevalonate decarboxylase activity, kinase activity, ATP binding; INVOLVED IN: isoprenoid biosynthetic process, phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: mevalonate diphosphate decarboxylase 1 (TAIR:AT2G38700.1); Has 1522 Blast hits to 1521 proteins in 681 species: Archae - 55; Bacteria - 885; Metazoa - 122; Fungi - 149; Plants - 60; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20082046..20084762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115285.3 → NP_566995.1  GHMP kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566995.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JCU3, Q8LAR8, Q9M381
    UniProtKB/TrEMBL
    A0A178V9E4
    Conserved Domains (1) summary
    PLN02407
    Location:7 → 348
    PLN02407; diphosphomevalonate decarboxylase

  2. NM_001339656.1 → NP_001325821.1  GHMP kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LME2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JCU3.1

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