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Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824390, updated on 18-Sep-2024

Summary

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Official Full Name
Duplicated homeodomain-like superfamily protein
Primary source
TAIR:AT3G52250
Locus tag
AT3G52250
See related
Araport:AT3G52250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a protein with a putative role in mRNA splicing.
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (19376138..19383369)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene leukocyte immunoglobulin-like receptor family A protein Neighboring gene uncharacterized protein Neighboring gene transcriptional regulator ATRX Neighboring gene Pseudouridine synthase family protein Neighboring gene Transcription initiation factor IIF, beta subunit Neighboring gene general transcription factor group E6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Powerdress as the novel regulator enhances Arabidopsis seeds germination tolerance to high temperature stress by histone modification of SOM locus. Yang W, et al. Plant Sci, 2019 Jul. PMID 31084884
  2. POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana. Tasset C, et al. PLoS Genet, 2018 Mar. PMID 29547672, Free PMC Article
  3. POWERDRESS and diversified expression of the MIR172 gene family bolster the floral stem cell network. Yumul RE, et al. PLoS Genet, 2013. PMID 23349639, Free PMC Article
  4. POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis. Kim YJ, et al. Proc Natl Acad Sci U S A, 2016 Dec 20. PMID 27930340, Free PMC Article
  5. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Chen X, et al. Elife, 2016 Nov 22. PMID 27873573, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PWR (At3g52250) protein forms a core complex with HDA9 and HOS15.PWR expression and role in plant development.
    Title: HDA9-PWR-HOS15 Is a Core Histone Deacetylase Complex Regulating Transcription and Development.
  2. enhances seed germination tolerance to high temperature stress by histone modification of SOM locus
    Title: Powerdress as the novel regulator enhances Arabidopsis seeds germination tolerance to high temperature stress by histone modification of SOM locus.
  3. these findings thus uncover a role for PWR in facilitating thermomorphogenesis and suggest a potential link between histone deacetylation and H2A.Z nucleosome dynamics in plants.
    Title: POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana.
  4. PWR acts as a subunit in a complex with HDA9 to result in lysine deacetylation of histone H3 at specific genomic targets. [POWERDRESS]
    Title: POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis.
  5. The authors found that HDA9 acts in complex with a SANT domain-containing protein POWERDRESS (PWR) and transcription factor WRKY53. Genome-wide profiling of HDA9 occupancy reveals that HDA9 directly binds to the promoters of key negative regulators of senescence and this association requires PWR.
    Title: POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis.
  6. PWR(POWERDRESS) promotes floral determinacy by enhancing the expression of three of the five MIR172 members as well as CRC. [PWR]
    Title: POWERDRESS and diversified expression of the MIR172 gene family bolster the floral stem cell network.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_115085.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within epigenetic regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within floral meristem determinacy IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Duplicated homeodomain-like superfamily protein
NP_190793.2
  • Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: RNA splicing; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19376138..19383369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339565.1 → NP_001327905.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5C8, A0A384KKD5, A0A5S9XK47, A0A654FGT6, A0A7G2EQR2, F4J6V1
    Conserved Domains (1) summary
    pfam00249
    Location:866 → 909
    Myb_DNA-binding; Myb-like DNA-binding domain

  2. NM_115085.3 → NP_190793.2  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190793.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5C8, A0A384KKD5, A0A5S9XK47, A0A654FGT6, A0A7G2EQR2, F4J6V1
    Conserved Domains (1) summary
    pfam00249
    Location:866 → 909
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
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