PLC9 phosphatidylinositol-speciwc phospholipase C9 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: PLC9
Official Full Name: phosphatidylinositol-speciwc phospholipase C9
Primary source: TAIR:AT3G47220
Locus tag: AT3G47220
See related: Araport:AT3G47220
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATPLC9; phosphatidylinositol-specific phospholipase C9; phosphatidylinositol-speciwc phospholipase C9
Summary: Encodes a plasma membrane-localized phosphoinositide-specific phospholipase C with a role in thermotolerance.
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Genomic context

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See PLC9 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 8

Sequence:: Chromosome: 3; NC_003074.8 (17387883..17390960)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Similar expression patterns and phenotypes suggested that AtPLC3 and AtPLC9 may regulate the thermotolerance of Arabidopsis by the same mechanisms.
Title: The role of AtPLC3 and AtPLC9 in thermotolerance in Arabidopsis.
At4g38530 and Arabidopsis thaliana PLC9 have an additive effect on thermotolerance.
Title: Arabidopsis thaliana phosphoinositide-specific phospholipase C isoform 3 (AtPLC3) and AtPLC9 have an additive effect on thermotolerance.
AtPLC9 plays a role in thermotolerance in Arabidopsis.
Title: Phosphoinositide-specific phospholipase C9 is involved in the thermotolerance of Arabidopsis.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_114589.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phosphatidylinositol phospholipase C activity	IMP Inferred from Mutant Phenotype more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within calcium ion homeostasis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within heat acclimation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in intracellular signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: phosphatidylinositol-speciwc phospholipase C9

NP_190306.2

phosphatidylinositol-speciwc phospholipase C9 (PLC9); FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-speciwc phospholipase C8 (TAIR:AT3G47290.1); Has 2576 Blast hits to 1856 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1868; Fungi - 226; Plants - 282; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

17387883..17390960

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_114589.5 → NP_190306.2 phosphatidylinositol-speciwc phospholipase C9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190306.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6NMA7, Q9SD51

UniProtKB/TrEMBL

A0A178VES8

Conserved Domains (3) summary

PLN02223
Location:2 → 531

PLN02223; phosphoinositide phospholipase C

cd00275
Location:402 → 531

C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

cl14615
Location:106 → 372

PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily