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Nucleic acid-binding proteins superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821951, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleic acid-binding proteins superfamily
Primary source
TAIR:AT3G23700
Locus tag
AT3G23700
See related
Araport:AT3G23700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (8531374..8533834, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Tic22-like family protein Neighboring gene SCR-like 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A chloroplast-localized S1 domain-containing protein SRRP1 plays a role in Arabidopsis seedling growth in the presence of ABA. Gu L, et al. J Plant Physiol, 2015 Sep 15. PMID 26513458
  2. Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. Watkins KP, et al. Plant J, 2020 Apr. PMID 31793101
  3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_113274.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA duplex unwinding IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within RNA folding IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within maturation of 5S rRNA IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
Nucleic acid-binding proteins superfamily
NP_566737.1
  • Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 30347 Blast hits to 20342 proteins in 2814 species: Archae - 227; Bacteria - 22388; Metazoa - 193; Fungi - 227; Plants - 347; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8531374..8533834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113274.5 → NP_566737.1  Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566737.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJX8, A0A384KDG4, Q9LK47
    Conserved Domains (1) summary
    COG0539
    Location:97 → 311
    RpsA; Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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