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Cyclopropane-fatty-acyl-phospholipid synthase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821929, updated on 18-Sep-2024

Summary

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Official Full Name
Cyclopropane-fatty-acyl-phospholipid synthase
Primary source
TAIR:AT3G23480
Locus tag
AT3G23480
See related
Araport:AT3G23480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (8418778..8422975)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Cyclopropane-fatty-acyl-phospholipid synthase Neighboring gene cyanase Neighboring gene ncRNA Neighboring gene Cyclopropane-fatty-acyl-phospholipid synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203025.2
NM_113251.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cyclopropane-fatty-acyl-phospholipid synthase
NP_001189954.1
  • Cyclopropane-fatty-acyl-phospholipid synthase; INVOLVED IN: lipid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23470.1).
NP_188990.4
  • Cyclopropane-fatty-acyl-phospholipid synthase; INVOLVED IN: lipid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23470.1); Has 9503 Blast hits to 9491 proteins in 1576 species: Archae - 9; Bacteria - 4978; Metazoa - 65; Fungi - 341; Plants - 241; Viruses - 0; Other Eukaryotes - 3869 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8418778..8422975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338642.1 → NP_001326592.1  Cyclopropane-fatty-acyl-phospholipid synthase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPR7, A0A654FBW7

  2. NM_001203025.2 → NP_001189954.1  Cyclopropane-fatty-acyl-phospholipid synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189954.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FBW7, F4J434
    Conserved Domains (2) summary
    COG2230
    Location:145 → 415
    Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
    pfam12847
    Location:201 → 302
    Methyltransf_18; Methyltransferase domain

  3. NM_113251.5 → NP_188990.4  Cyclopropane-fatty-acyl-phospholipid synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188990.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J435, Q9LK68
    Conserved Domains (2) summary
    COG2230
    Location:151 → 436
    Cfa; Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]
    pfam12847
    Location:222 → 323
    Methyltransf_18; Methyltransferase domain
Nucleotide Protein
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