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Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821906, updated on 18-Sep-2024

Summary

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Official Full Name
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
Primary source
TAIR:AT3G23270
Locus tag
AT3G23270
See related
Araport:AT3G23270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (8316218..8320487)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
NP_188968.1
  • Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT4G14368.1); Has 25157 Blast hits to 10467 proteins in 596 species: Archae - 58; Bacteria - 2385; Metazoa - 9739; Fungi - 1750; Plants - 3215; Viruses - 10; Other Eukaryotes - 8000 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8316218..8320487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338622.1 → NP_001327882.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGC8, A0A1I9LTP1

  2. NM_113228.2 → NP_188968.1  Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188968.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGC8, F4J2Y2
    Conserved Domains (6) summary
    smart00064
    Location:594 → 661
    FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
    cd13365
    Location:13 → 120
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
    pfam00415
    Location:544 → 588
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam08381
    Location:948 → 1000
    BRX; Transcription factor regulating root and shoot growth via Pin3
    pfam13540
    Location:253 → 276
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat
    pfam13713
    Location:846 → 879
    BRX_N; Transcription factor BRX N-terminal domain
Nucleotide Protein
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