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DHHC-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821782, updated on 18-Sep-2024

Summary

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Official Full Name
DHHC-type zinc finger family protein
Primary source
TAIR:AT3G22180
Locus tag
AT3G22180
See related
Araport:AT3G22180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (7827036..7830856)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene far-red elongated hypocotyls 3 Neighboring gene uncharacterized protein Neighboring gene IQ-domain 5 Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis protein S-acyl transferases positively mediate BR signaling through S-acylation of BSK1. Liu F, et al. Proc Natl Acad Sci U S A, 2024 Feb 13. PMID 38315835, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_113115.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in early endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DHHC-type zinc finger family protein
NP_188857.1
  • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G15080.1); Has 4636 Blast hits to 4623 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 2035; Fungi - 613; Plants - 838; Viruses - 0; Other Eukaryotes - 1150 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7827036..7830856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113115.4 → NP_188857.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188857.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LIE4
    UniProtKB/TrEMBL
    A0A5S9XEH4, A0A654FBH0
    Conserved Domains (1) summary
    pfam01529
    Location:168 → 305
    DHHC; DHHC palmitoyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIE4.2

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