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PLDP1 phospholipase D P1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820932, updated on 18-Sep-2024

Summary

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Official Symbol
PLDP1
Official Full Name
phospholipase D P1
Primary source
TAIR:AT3G16785
Locus tag
AT3G16785
See related
Araport:AT3G16785
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PHOSPHOLIPASE D; phospholipase D P1; PHOSPHOLIPASE D P1; PHOSPHOLIPASE D ZETA 1; PHOSPHOLIPASE D ZETA1; PLD ZETA 1; PLDZ1; PLDZETA1
Summary
Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.
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Genomic context

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See PLDP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Sequence:
Chromosome: 3; NC_003074.8 (5710889..5719192)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ethylene-responsive element binding protein Neighboring gene Ribosomal protein L19e family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene pumilio 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner. Shimamura R, et al. Plant Mol Biol, 2022 Jan. PMID 34601701
  2. Phospholipases AtPLDζ1 and AtPLDζ2 function differently in hypoxia. Lindberg S, et al. Physiol Plant, 2018 Jan. PMID 28834646
  3. Phospholipases Dζ1 and Dζ2 have distinct roles in growth and antioxidant systems in Arabidopsis thaliana responding to salt stress. Ben Othman A, et al. Planta, 2017 Oct. PMID 28667438
  4. Phospholipase Dζ Enhances Diacylglycerol Flux into Triacylglycerol. Yang W, et al. Plant Physiol, 2017 May. PMID 28325849, Free PMC Article
  5. Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants. Li M, et al. Plant Physiol, 2006 Oct. PMID 16891548, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis PLDzeta1 and PLDzeta2 localize to post-Golgi membrane compartments in a partially overlapping manner.
    Title: Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner.
  2. The efficiency of photosystem II, estimated by measuring the ratio of chlorophyll fluorescence (F v/F m ratio), was strongly decreased in pldzeta1 under salt stress. In conclusion, PLDzeta2 plays a key role in determining Arabidopsis sensitivity to salt stress allowing ion transport and antioxidant responses to be finely regulated.
    Title: Phospholipases Dζ1 and Dζ2 have distinct roles in growth and antioxidant systems in Arabidopsis thaliana responding to salt stress.
  3. AtPLDzeta2 is involved in phosphatidic acids production by a calcium signaling pathway, while AtPLDzeta1 is more important in reactive oxygen species signaling.
    Title: Phospholipases AtPLDζ1 and AtPLDζ2 function differently in hypoxia.
  4. PLDzeta1 plays a role in regulating root development in response to nutrient limitation.
    Title: Double knockouts of phospholipases Dzeta1 and Dzeta2 in Arabidopsis affect root elongation during phosphate-limited growth but do not affect root hair patterning.
  5. Hydrolysis of phosphatidylcholine by PLD zetas during phosphorus starvation contributes to the supply of inorganic phosphorus in A. thaliana.
    Title: Quantitative profiling of Arabidopsis polar glycerolipids in response to phosphorus starvation. Roles of phospholipases D zeta1 and D zeta2 in phosphatidylcholine hydrolysis and digalactosyldiacylglycerol accumulation in phosphorus-starved plants.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_001338257.1
NM_001338258.1
NM_001338259.1
NM_112553.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase D activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase D activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phospholipase D activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
NOT involved_in cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within root development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phospholipase D P1
NP_188302.2
  • phospholipase D P1 (PLDP1); CONTAINS InterPro DOMAIN/s: Phospholipase D, eukaryota (InterPro:IPR016555), Pleckstrin homology-type (InterPro:IPR011993), Phospholipase D (InterPro:IPR015679), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phospholipase D P2 (TAIR:AT3G05630.1); Has 3214 Blast hits to 1855 proteins in 548 species: Archae - 2; Bacteria - 1049; Metazoa - 509; Fungi - 676; Plants - 827; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5710889..5719192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338255.1 → NP_001326711.1  phospholipase D P1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VA82, A0A1I9LQ42
    Conserved Domains (1) summary
    PLN02866
    Location:38 → 993
    PLN02866; phospholipase D

  2. NM_001338256.1 → NP_001326710.1  phospholipase D P1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VA82, A0A1I9LQ42
    Conserved Domains (1) summary
    PLN02866
    Location:38 → 993
    PLN02866; phospholipase D

  3. NM_112553.4 → NP_188302.2  phospholipase D P1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188302.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LRZ5
    UniProtKB/TrEMBL
    A0A7G2EQU8
    Conserved Domains (1) summary
    PLN02866
    Location:38 → 1096
    PLN02866; phospholipase D

  4. NM_001338257.1 → NP_001326709.1  phospholipase D P1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQ40, A0A7G2EQU8

  5. NM_001338258.1 → NP_001326708.1  phospholipase D P1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VA82, A0A1I9LQ38

  6. NM_001338259.1 → NP_001326707.1  phospholipase D P1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VA82, A0A1I9LQ38
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRZ5.1

Gene LinkOut

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