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EXPA12 expansin 12 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820776, updated on 18-Sep-2024

Summary

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Official Symbol
EXPA12
Official Full Name
expansin 12
Primary source
TAIR:AT3G15370
Locus tag
AT3G15370
See related
Araport:AT3G15370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEXP12; ATEXPA12; ATHEXP ALPHA 1.24; EXP12; expansin 12; EXPANSIN 12
Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
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Genomic context

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See EXPA12 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (5190554..5192197)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphopantothenoylcysteine decarboxylase subunit Neighboring gene thioredoxin M-type 4 Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene silencing defective 5 Neighboring gene HrpN-interacting protein from malus protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
  2. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112405.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type cell wall loosening NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within unidimensional cell growth NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
expansin 12
NP_188156.1
  • expansin 12 (EXPA12); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A17 (TAIR:AT4G01630.1); Has 2144 Blast hits to 2141 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 40; Plants - 2066; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5190554..5192197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338165.1 → NP_001327548.1  expansin 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSN2, A0A5S9XCD6, A0A654F934

  2. NM_112405.3 → NP_188156.1  expansin 12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188156.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q53XE5, Q9LDJ3
    UniProtKB/TrEMBL
    A0A178VC47, A0A5S9XCD6, A0A654F934
    Conserved Domains (1) summary
    PLN00193
    Location:25 → 246
    PLN00193; expansin-A; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LDJ3.1

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