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Plant stearoyl-acyl-carrier-protein desaturase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820773, updated on 18-Sep-2024

Summary

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Official Full Name
Plant stearoyl-acyl-carrier-protein desaturase family protein
Primary source
TAIR:AT3G02630
Locus tag
AT3G02630
See related
Araport:AT3G02630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16B3.26; F16B3_26
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (562030..564870)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plant stearoyl-acyl-carrier desaturase family protein Neighboring gene Plant stearoyl-acyl-carrier-protein desaturase family protein Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF247)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Function of ACYL-ACYL CARRIER PROTEIN DESATURASE 5 on Seed Oil and Oleic Acid Biosynthesis between Arabidopsis thaliana and Brassica napus. Jin C, et al. Front Plant Sci, 2017. PMID 28791041, Free PMC Article
  2. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_111131.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables stearoyl-[ACP] desaturase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 

General protein information

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Preferred Names
Plant stearoyl-acyl-carrier-protein desaturase family protein
NP_186912.1
  • Plant stearoyl-acyl-carrier-protein desaturase family protein; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction, fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT5G16240.1); Has 934 Blast hits to 926 proteins in 218 species: Archae - 0; Bacteria - 428; Metazoa - 2; Fungi - 0; Plants - 447; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    562030..564870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111131.3 → NP_186912.1  Plant stearoyl-acyl-carrier-protein desaturase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186912.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L468, Q8LBC6, Q9M879
    UniProtKB/TrEMBL
    A0A178VB94, A0A5S9X8I5
    Conserved Domains (1) summary
    PLN00179
    Location:3 → 395
    PLN00179; acyl- [acyl-carrier protein] desaturase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M879.1

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