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SCL30A SC35-like splicing factor 30A [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820559, updated on 18-Sep-2024

Summary

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Official Symbol
SCL30A
Official Full Name
SC35-like splicing factor 30A
Primary source
TAIR:AT3G13570
Locus tag
AT3G13570
See related
Araport:AT3G13570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
At-SCL30A; SC35-like splicing factor 30A
Summary
encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Genomic context

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See SCL30A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (4429256..4432159, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-conjugating enzyme family protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SCL30a SR protein regulates ABA-dependent seed traits and germination under stress. Laloum T, et al. Plant Cell Environ, 2023 Jul. PMID 37098235
  2. Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA. Thomas J, et al. Plant J, 2012 Dec. PMID 22913769
  3. Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains. Rausin G, et al. Plant Physiol, 2010 May. PMID 20237019, Free PMC Article
  4. Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Lorković ZJ, et al. Exp Cell Res, 2008 Oct 15. PMID 18674533
  5. Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. Lopato S, et al. J Biol Chem, 2002 Oct 18. PMID 12176998

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The SCL30a SR protein regulates ABA-dependent seed traits and germination under stress.
    Title: The SCL30a SR protein regulates ABA-dependent seed traits and germination under stress.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112203.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing NAS
Non-traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within mRNA splicing, via spliceosome IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nuclear speck IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SC35-like splicing factor 30A
NP_187966.1
  • SC35-like splicing factor 30A (SCL30A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 33 (TAIR:AT1G55310.3); Has 39411 Blast hits to 22154 proteins in 1003 species: Archae - 84; Bacteria - 1991; Metazoa - 19033; Fungi - 3968; Plants - 4828; Viruses - 731; Other Eukaryotes - 8776 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4429256..4432159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112203.4 → NP_187966.1  SC35-like splicing factor 30A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187966.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FYA8, Q9LHP2
    UniProtKB/TrEMBL
    A0A178VJ91, A0A5S9XBT6, A0A654F8H6
    Conserved Domains (3) summary
    COG0724
    Location:36 → 225
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam10446
    Location:196 → 262
    DUF2457; Protein of unknown function (DUF2457)
    cl17169
    Location:37 → 120
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LHP2.1

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