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LBD21 LOB domain-containing protein 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820280, updated on 18-Sep-2024

Summary

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Official Symbol
LBD21
Official Full Name
LOB domain-containing protein 21
Primary source
TAIR:AT3G11090
Locus tag
AT3G11090
See related
Araport:AT3G11090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11B9.5; LOB domain-containing protein 21
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Genomic context

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See LBD21 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (3474922..3475848)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Outer membrane OMP85 family protein Neighboring gene receptor like protein 35 Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_111946.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOB domain-containing protein 21
NP_187720.1
  • LOB domain-containing protein 21 (LBD21); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 1016 Blast hits to 1011 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1016; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3474922..3475848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111946.5 → NP_187720.1  LOB domain-containing protein 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187720.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG66, Q9SRL8
    UniProtKB/TrEMBL
    A0A178V6L2, A0A5S9XBA2
    Conserved Domains (1) summary
    pfam03195
    Location:11 → 108
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRL8.1

Gene LinkOut

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