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ASL15 Lateral organ boundaries (LOB) domain family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818844, updated on 18-Sep-2024

Summary

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Official Symbol
ASL15
Official Full Name
Lateral organ boundaries (LOB) domain family protein
Primary source
TAIR:AT2G42440
Locus tag
AT2G42440
See related
Araport:AT2G42440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASYMMETRIC LEAVES 2-like 15; LBD17; LOB domain-containing protein 17; MHK10.16; MHK10_16
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Genomic context

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See ASL15 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (17668701..17669836, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene lateral organ boundaries-domain 16 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene MATH domain/coiled-coil protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration. Fan M, et al. Cell Res, 2012 Jul. PMID 22508267, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within callus formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Lateral organ boundaries (LOB) domain family protein
NP_850370.4
  • Lateral organ boundaries (LOB) domain family protein; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1); Has 862 Blast hits to 857 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 862; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17668701..17669836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180039.5 → NP_850370.4  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850370.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG69, Q8S9M2, Q9SLB6
    UniProtKB/TrEMBL
    A0A178W0K1, A0A5S9X6C5
    Conserved Domains (1) summary
    pfam03195
    Location:7 → 106
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLB6.1

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